PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g020470.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 160aa    MW: 17844.2 Da    PI: 6.5027
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g020470.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.35e-2861042100
          DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     Ca Ckvl+++C ++C++  +fp+++  +f+ v+++FGa+ v ++ ++l +ee+r++a++sl+y A+ar rdPv+G +g+++++++ l+ +++e++
  Csa10g020470.1   6 CAICKVLKKNCDSNCIYKAHFPSND-TRFEDVNQIFGAEIVANIFNSLeSEEQRKIAANSLCYAAKARRRDPVSGILGMVQHYESILNYVEQEIK 99 
                     **********************998.89********************55566****************************************** PP

          DUF260  96 llkee 100
                     l+++e
  Csa10g020470.1 100 LAENE 104
                     99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.1774105IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-256102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MNLNCCAICK VLKKNCDSNC IYKAHFPSND TRFEDVNQIF GAEIVANIFN SLESEEQRKI  60
AANSLCYAAK ARRRDPVSGI LGMVQHYESI LNYVEQEIKL AENELKTNVG PDQVPKYVDI  120
PIPDDFLVKR EDRKMGDGHR VNDASTSAGP SSTLPKKHE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010436437.11e-117PREDICTED: LOB domain-containing protein 32-like
SwissprotO496514e-48LBD32_ARATH; LOB domain-containing protein 32
TrEMBLR0GTP66e-69R0GTP6_9BRAS; Uncharacterized protein
STRINGscaffold_702084.12e-53(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22700.13e-49LOB domain-containing protein 32